The Complete Third Season was released onto DVD in region one on May 9, 2006. It contains all 22 Season Three episodes, plus bonus features.
- Get ready for one wacky house call with the hilarious third season of Scrubs. It's a wole new year for the staff of Sacred Heart as Elliot undergoes a complete makeover in an attempt to change her luck, and the residents discover the incredible healing powers of an epiphany toilet.
- Joining J.D. and the gang are a host of hysterical guest stars, including Tom Cavanagh (Ed), Tara Reid (American Pie) and the legendary Michael J. Fox - "One of our all-time favorite comedy actors returns to the small screen... on our of our all-time favorite shows," raves Entertainment Weekly. Bursting with highly contagious bonus features and featuring the show's original, unedited music in 5.1 Surround Sound, Scrubs’ complete third season is just what the doctor ordered.
DVD case description
The Third Season DVD case has a plastic cover and cardboard fold-out case. The slip cover is see-through, and it looks as if the main characters are pushing a gurney through a door to surgery, but just the gurney is seen on the cardboard case. Also, on the back of the cardboard case, the skeletons of the cast members pictured on the rear of the plastic sleeve are shown. On the first disc is Elliot and J.D., Carla and Turk are on the second, and Janitor and Dr. Cox are on the third.
- "My Own American Girl"
- "My Journey"
- "My White Whale"
- "My Lucky Night"**
- "My Brother, Where Art Thou?"
- "My Advice to You"
- "My Fifteen Seconds"
- "My Friend the Doctor"
- "My Dirty Secret"
- "My Rule of Thumb"
- "My Clean Break"
- "My Catalyst"**
- "My Porcelain God"
- "My Screw Up"
- "My Tormented Mentor"
- "My Butterfly"
- "My Moment of Un-Truth"
- "His Story II"*
- "My Choosiest Choice of All"
- "My Fault"
- "My Self-Examination"*
- "My Best Friend's Wedding"
- Bonus Features
- * Optional audio commentary.
- ** Supersized episode.
- Scrubbed Out - Deleted scenes
- Gag Reel
- Alternate Lines: A Second Opinion
- Twist and Shoot - First-time directors
- Don't Try This at Home - Stunts featurette
- Long Term Residents - Behind season three's unforgettable guest star appearances.
- What's Up Dawg? - Dogs of the cast and crew
- Scrubs Factor - How far will the cast and crew go on a dare?
- Is There a Doctor in the House? - Extended cast interview
- The New Elliot - Watch her character go from pushover to knockout
- J.D. and Elliot love saga featurette
- One-On-One with "The Todd"
- Audio commentaries on two episodes
- Three "Supersized" episodes (approximately 6 minutes longer than originally aired)
The season three DVDs continue the use of the CGI Sacred Heart. This time, the DVD shows you walking through the hallway and suddenly hiding in the storage closet, a gag used many times on Scrubs. The episode selection menus are TV monitors in the storage closet.