The Complete Sixth Season was released onto DVD in region one on October 30, 2007. It contains all 22 Season Six episodes, plus bonus features.
- Fill your prescription for laughs with the sixth dose of the Emmy Award-winning Scrubs. The doctors of Sacred Heart make their rounds in the most surreal comedy on network television.
- Expect big bundles of laughs this year as J.D. and Kim, Turk and Carla, and Dr. Cox and Jordan are all expecting little bundles of joy, and the entire crew take an unforgettable road trip.
- Continue your Scrubs collection with all 22 episodes of the groundbreaking sitcom's sensational sixth season. with a band of hilarious guest stars and exclusive bonus features, including alternate takes and bloopers, this three-disc set is the perfect cure for the entertainment blues.
DVD case description
The Sixth Season DVD case is once again all cardboard. The sleeve and fold-out case have promotional images of the cast and from episodes. The first disc has a close up image of an IV bag, the second has a rose, and the third disc has an apppletini glass with a thermometer in it.
- "My Mirror Image"
- "My Best Friend's Baby's Baby and My Baby's Baby"
- "My Coffee"
- "My House"
- "My Friend with Money"
- "My Musical"
- "His Story IV"
- "My Road to Nowhere"
- "My Perspective"
- "My Therapeutic Month"
- "My Night to Remember"
- "My Fishbowl"
- "My Scrubs"
- "My No Good Reason"
- "My Long Goodbye"
- "My Words of Wisdom"
- "Their Story"
- "My Turf War"
- "My Cold Shower"
- "My Conventional Wisdom"
- "My Rabbit"
- "My Point of No Return"
- Bonus Features
- Note: Optional audio commentary are available on all episodes.
- My Making Of: My Musical: The cast stars in a musical episode with songs written by Tony Award-Winning composers. See it all - from rehearsals to the full-blown spectacle.
- Judy Reyes Keeps Talking: The actress behind Carla Espinosa reveals her inspirations and secrets of the event-packed season
- Scrubbed Out: Deleted scenes
- Alternate Lines: A second opinion
- Practice, Practice, Malpractice: Outtakes (as advertised on box, but not actually on the disc)
- The Third Tier: A look at the recurring and background characters of Scrubs
- The Debra and Stephanie Show: Writer Debra Fordham and actress Stephanie D'Abruzzo chat about "My Musical"
- A hidden Easter Egg with Bill Lawrence and Randall Winston, giving hints about plot points in Season Seven.
- Audio Commentaries on every episode:
- "My Mirror Image": Neil Flynn
- "My Best Friend's Baby's Baby and My Baby's Baby": Producers/writers Garrett Donovan and Neil Goldman
- "My Coffee": Director/editor Rick Blue and production designer Cabot McMullen
- "My House": Ken Jenkins and prop master John Ornelas
- "My Friend with Money": Neil Flynn and director/editor John Michel
- "My Musical": Sarah Chalke and writer Debra Fordham
- "His Story IV": Ken Jenkins and writer Mike Schwartz
- "My Road to Nowhere": Writer Mark Stegemann and Sam Lloyd
- "My Perspective": Writer Angela Nissel and make-up department head Phyllis Williams
- "My Therapeutic Month": Writer Aseem Batra and set dresser Patrick Bolton
- "My Night to Remember": Producer Randall Keenan Winston and writer's assistant Melody Derloshon
- "My Fishbowl": Neil Flynn and script coordinator Sean Russell
- "My Scrubs": Ken Jenkins and writer Clarence Livingston
- "My No Good Reason": Writer Janae Bakken, production coordinator Hillary Hirsch, and Robert Maschio
- "My Long Goodbye": Aloma Wright and writer Dave Tennant
- "My Words of Wisdom": Neil Flynn and writer Eric Weinberg
- "Their Story": Rob Maschio and writer Andy Schwartz
- "My Turf War": Writer Sean Russell and producer/actor Mike Schwartz
- "My Cold Shower": Sarah Chalke and writer Janae Bakken
- "My Conventional Wisdom": Writer Bill Callahan and director Michael McDonald
- "My Rabbit": Writers Garret Donovan, Aseem Batra, and Neil Goldman
- "My Point of No Return": Writers Garret Donovan, Aseem Batra, and Neil Goldman
The Season Six DVD return to the CGI Sacred Heart locations. The main menu and episode selection are of coffee cups in Coffee Bucks. The bonus features menu is of a muffin shelf.